Comment on "Want to Know which genome assembler rule the world ?"
Genome assembly tools at https://bioinformaticsonline.com/search?q=assembly&entity_type=object&entity_subtype=bookmarks&offset=0&search_type=entities2027 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Bioinformatics jobs in Spain http://genome.crg.es/main/joboffers.php2043 days ago
2061 days ago
Comment on "Nanopolis: polish a genome assembly"
# Index the draft genome bwa index draft.fa # Align the basecalled reads to the draft sequence...equency 0.1 nanopolish vcf2fasta -g draft.fa polished.*.vcf > polished_genome.fa2062 days ago
Comment on "Running Trinity on RNA-seq !"
...coding regions using TransDecoder and functionally annotate the transcripts using Trinotate. If your organism has an assembled genome, consider using the Trinity t...2086 days ago
2100 days ago
Comment on "Run miniasm assembler on nanopore reads !"
Must read paper https://genome.cshlp.org/content/27/5/737.full2130 days ago
Comment on "SPAdes hybrid genome assembly"
use SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly tools, and by default includes read correction. This takes up lots of RAM, so we are...2137 days ago
2138 days ago
Comment on "Run miniasm assembler on nanopore reads !"
I followed this to assemble the genome using ONT (nanopore reads) Minimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy reads, they do n...2138 days ago