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Results for "Genome Assembly"

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• • BioStar@biostar

  

  Comment on "Short-read assembly using Spades !"

  ...Short-read assembly is the process of constructing a genome sequence from a large number...reads. SPAdes (St. Petersburg genome assembler) is a popular software tool for short-read assembly. Here are the general steps for short-read assembly using SPAdes: Quality co...

  405 days ago

• • LEGE@lege

  

  Comment on "Short-read assembly using Spades !"

  ...SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads gene...to use SPAdes for short-read assembly: Install SPAdes: SPAdes...everal options for tuning the assembly parameters, such as adjusting...

  411 days ago

• • Neelam Jha@neelam

  

  Comment on "Genome assembly training tutorial at Galaxy !"

  Understandinng genome assembly processes https://academic.oup.com/bfg/article/15/1/1/1741842

  943 days ago

• • Jit@jit.aber

  

  Comment on "Genome assembly tutorial "Genome Assembly for short and long reads""

  Do it yourself guide to genome assembly https://academic.oup.com/bfg/article/15/1/1/1741842

  1521 days ago

• • Rahul Nayak@rahul

  

  Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"

  Basic commands for genome assembly https://raw.githubusercontent.com/rrwick/Long-read-assembler-comparison/master/supplementary_figures/Fig_S04_commands.png

  1539 days ago

• • Rahul Nayak@rahul

  

  Comment on "Assembly tutorial PPT"

  Genome assembly tutorial https://astrobiomike.github.io/genomics/de_novo_assembly

  1952 days ago

• • Jit@jit.aber

  

  Comment on "Long read assembly workshop !"

  Long reads base bacterial genome assembly https://inf-biox121.readthedocs.io/en/2016/Assembly/practicals/07_Assembly_using_minasm+racon.html

  2029 days ago

• • Rahul Nayak@rahul

  

  Comment on "Long read assembly workshop !"

  Bacterial genome assembly tutorial http://evomics.org/learning/assembly-and-alignment/2017-assembly-lab/

  2030 days ago

• • BioStar@biostar

  

  Comment on "Want to Know which genome assembler rule the world ?"

  Genome assembly tools at https://bioinformaticsonline.com/search?q=assembly&entity_type=object&entity_subtype=bookmarks&offset=0&search_type=entities

  2055 days ago

• • Rahul Nayak@rahul

  

  Comment on "CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing."

  ...e | -trim-assemble] \ [-s <assembly-specifications-file>] \ -p <assembly-prefix> \ -d <assembly-directory> \ genomeSize=<number>[g|m|k] \ [...s in the same directory. The genome size should be your best guess...in reads, NOT as the desired assembly size. Fractional values are a...

  2089 days ago

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