Results for "Genomes"

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  • GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads

    This software is provided ``as is” without warranty of any kind. In no event shall the author be held responsible for any damage resulting from the use of this software. The program package, including source codes, executables, and this documentation, is distributed free of charge. If you u...

    Tags: GAPPadder, Sensitive, Approach, Closing, Gaps, Draft, Genomes, Short, Sequence, Reads, Genome, Assembly

    2146 days ago

  • Hapsembler: An Assembler for Highly Polymorphic Genomes

    Hapsembler is a haplotype-specific genome assembly toolkit that is designed for genomes that are rich in SNPs and other types of polymorphism. Hapsembler can be used to assemble reads from a variety of platforms including Illumina and Roche/454. http://compbio.cs.toronto.edu/hapsembler/

    Tags: Hapsembler, Assembler, Polymorphic, Genomes, Assembly, Genome

    2138 days ago

  • Understanding liftOver !

    LiftOver is a necesary step to bring all genetical analysis to the same reference build. LiftOver can have three use cases: (1) Convert genome position from one genome assembly to another genome assembly In most scenarios, we have known genome positions in NCBI build 36 (UCSC hg 18) and hope to...

    Tags: LiftOver, Unlifted, lifted, switch, Coordinates, Genes, Genomes

    2123 days ago

  • D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way

    D-GENIES – for Dotplot large Genomes in an Interactive, Efficient and Simple way – is an online tool designed to compare two genomes. It supports large genome and you can interact with the dot plot to improve the visualisation. We use minimap version 2 to align the two genomes. Then, the PAF f...

    Tags: D-GENIES, tool, Dotplot, large, Genomes, Interactive, Efficient, Simple, DNA, Sequences, Visualization

    2118 days ago

  • https://www.ebi.ac.uk/about/news/announcements/25-genomes-UK-species #Genomes #Sequenced #UK

    Tags: Genomes, Sequenced, UK

    1999 days ago

  • Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life

     Ancestral Genomes (http://ancestralgenomes.org) is a resource for comprehensive reconstructions of these ‘fossil genomes’. Comprehensive sets of protein-coding genes have been reconstructed for 78 genomes of now-extinct species that were the common ancestors of extant species fr...

    Tags: Ancestral, Genomes, resource, reconstructed, genes, genomes, across, tree, life

    1974 days ago

  • 598 Indian Genomes from 55 ethnic groups Sequenced

    This study reports sequence from 1,267 individuals that includes 598 individuals representing 55 ethnic groups that span the major language groups across India. Importantly, this study found many large population groups from India in which individuals were more related to each other by des...

    Tags: 598, Indian, Genomes, 55, ethnic, groups, Sequenced

    1567 days ago

  • DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies

    DeCoSTAR computes adjacency evolutionary scenarios using a scoring scheme based on a weighted sum of adjacency gains and breakages. Solutions, both optimal and near-optimal, are sampled according to the Boltzmann–Gibbs distribution centered around parsimonious solutions, and statistical sup...

    Tags: DeCoSTAR, Reconstruction, Ancestral, Organization, Genes, Genomes, Reconciled, Phylogenies

    1547 days ago

  • shovill: Assemble bacterial isolate genomes from Illumina paired-end reads

    Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill pr...

    Tags: shovill, Assemble, bacterial, isolate, genomes, Illumina, paired-end, reads

    1182 days ago

  • karyoploteR: plot whole genomes with arbitrary data

    karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted on them. It is inspired by the R base graphics system and does not depend on other graphics packages. The aim of karyoploteR is to offer the user an easy way to plot data a...

    Tags: karyoploteR, plot, whole, genomes, NGS, arbitrary, data, karyotype

    1914 days ago