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Tools to detect synteny blocks regions among multiple genomes
...flipped around on the respective genomes. Ovcharenko et. al. define it...ch of the two species) on several genomes. Figure: Image generated w...regions syntenic across multiple genomes and measuring the extent of g...nteny regions between two or more genomes and interactively visualize t...2563 days ago
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Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3855 days ago
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Evaluation of genome assembly software based on long reads
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Genome Assembly Tools and Software - PART2 !!
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Awesome perl frameworks, libraries and software - PART 4
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100K Foodborne Pathogen Genome Project
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Structural polymorphism analysis from NGS data
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The Best Bioinformatics / Computational Biology Quotes
...he genetic code :P If at first you don't succeed; call it version 1.0 The glass is neither half-full nor half-empty: it's actually have several genomes. I'm BioGeek. Fedup with LI...3673 days ago
Bioinformatics -- Understanding of living systems through information science
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Download the genome from NCBI using bash script/command
...curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...2485 days ago
Download the gff files from NCBI using bash script/command
...curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...2476 days ago
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Translational Bioinformatics: Transforming 300 Billion Points of Data
Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnostics, Therapeutics, and New Insights into Disease Air date: Wednesday, June 20, 2012, 3:00:00 PM Time displayed is Eastern Time, Washington DC Local Description: There is an urgent need to transla...Tags: Bioinformatics, Computational Biology, Data Mining, Genomes
3863 days ago
Tags: Genomes, Annotation
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Comment on "Short-read assembly using Spades !"
...be done using tools such as QUAST or BUSCO. These tools assess the completeness and accuracy of the assembled genome by comparing it to reference genomes or sets of conserved genes....368 days ago
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