Results for "Genomes"

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  • DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes

    The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function which accounts for the distance between neighboring genes on eac...

    Tags: Bioinformatics, DAGchainer, Computing, Chains, Syntenic, Genes, Genomes

    216 days ago

  • ANGES: reconstructing ANcestral GEnomeS maps

    This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 (July 10, 2012, documentation updated in August 2014) Examples with results (featured ancestors: boreoeutherian,...

    Tags: Reconstruction, Ancestral, Genomes, Maps, ANGES

    126 days ago

  • Pollux: platform independent error correction of single and mixed genomes

    Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcting substitution errors, we locate and correct insertion, deletion, and homopolymer err...

    Tags: Pollux, Platform, Independent, Error, Correction, Single, Mixed, Genomes

    125 days ago

  • BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly

    This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap-filling. If you encounter any issues, please contact me at kklam@eecs.berkeley.edu. My name is Ka-Kit Lam. https://github.com/kakitone/MetaFinisherSC ht...

    Tags: BIGMAC, Breaking, Inaccurate, Genomes, Merging, Assembled, Contigs, Long, Read, Metagenomic, Assembly

    122 days ago

  • GOLD:Genomes Online Database

    GOLD:Genomes Online Database, is a World Wide Web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. https://gold.jgi.doe.gov/

    Tags: GOLD, Genomes, Online, Database, comprehensive, access, information, genome, metagenome, sequencing, projects, metadata

    57 days ago

  • GView: A Java application for viewing and examining prokaryotic genomes in a circular or linear context

    GView is a Java application for viewing and examining prokaryotic genomes in a circular or linear context. It accepts standard sequence file formats and an optional style specification file to generate customizable, publication quality genome maps in bitmap and scalable vector graphics formats. G...

    Tags: GView, Java, application, view, prokaryote, genomes, circular, linear, context

    69 days ago

  • Companion: a web server for annotation and analysis of parasite genomes

    Currently available sequencing technologies enable quick and economical sequencing of many new eukaryotic parasite (apicomplexan or kinetoplastid) species or strains. Compared to SNP calling approaches, de novo assembly of these genomes enables researchers to additionally determine inse...

    Tags: Companion, web, server, annotation, analysis, parasite, genomes

    30 days ago