Results for "Genomic"

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  • GAM-NGS: genomic assemblies merger for next generation sequencing

    GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its full potential with multi-library Illumina-based projects. With more than 20 available assemblers it is hard to select the best...

    Tags: GAM-NGS, Genomic, Assemblies, Merger, Sequencing, NGS

    2505 days ago

  • S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences

    S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smaller prokaryotic genomes can be efficiently compared. The tool includes funct...

    Tags: S-plot2, Rapid, Visual, Statistical, Analysis, Genomic, Sequences

    2004 days ago

  • GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research

    GRAbB is shown to be more efficient than MITObim in terms of speed, memory and disk usage. The other functionalities (handling multiple targets simultaneously and extracting homologous regions) of the new program are not matched by other programs. The program is available with explanatory documen...

    Tags: GRAbB, Selective, Assembly, Genomic, Regions, New, Niche, Genomic, Research

    1888 days ago

  • GRIDSS: the Genomic Rearrangement IDentification Software Suite

    GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls variants based on alignment-guided positional de Bruijn gra...

    Tags: GRIDSS, Genomic, Rearrangement, IDentification, Software, Suite

    1411 days ago

  • Genomic Open-source Breeding informatics initiative

    To build open-source genomic data management and analysis tools to enable breeders to implement genomic and marker-assisted selection as part of their routine breeding programs. To transform breeding by connecting diverse data with precision breeding tools to advance yields and adaptation to loc...

    Tags: Genomic, Open-source, Breeding, informatics, initiative

    1177 days ago

  • BEDOPS v2.4.26: high-performance genomic feature operations

    BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic...

    Tags: BEDOPS, high-performance, genomic, feature, operations, NGS, BED

    2481 days ago

  • Web Apollo: a web-based genomic annotation editing platform

    Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researchers require tools to desc...

    Tags: Web, Apollo, genomic, annotation, editing, platform

    2436 days ago

  • Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence

    Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast, a simple pipeline with a graphical user interface, for the post-assembly detection of contaminating sequences in ...

    Tags: Taxoblast, pipeline, identify, contamination, genomic, sequence

    2317 days ago

  • SVfinder: Tool for detecting genomic rearrangement form DNA-seq data

    SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.

    Tags: SVfinder, Tool, detecting, genomic, rearrangement, DNA-seq

    2296 days ago

  • kraken: A universal genomic coordinate translator for comparative genomics

    If you planning on conducting a study involving dozens of large genomes, then you do not have to run all pairwise synteny alignments .. simply try kraken: A universal genomic coordinate translator for comparative genomics

    Tags: kraken, universal, genomic, coordinate, translator, comparative, genomics

    2304 days ago