Results for "Graph"

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  • InfoGenomeR: Integrative reconstruction of cancer genome karyotypes

    ...Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity amo...ific CNAs, and haplotype information to identify the optimal breakpoint graph representing cancer genomes....

    1058 days ago

  • RNA-Seq De novo Assembly Using Trinity

    ...e sequence data into many individual de Bruijn graphs, each representing the trans...a given gene or locus, and then processes each graph independently to extract full...nto clusters and constructs complete de Bruijn graphs for each cluster. Each clust...

    2927 days ago

  • PhyloGrapher - Graph Visualization Tool

    PhyloGrapher is a program designed to visualize...ologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements....p; More at http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html

    2912 days ago

  • GATB : Genome Analysis Toolbox with de-Bruijn graph

    The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of...

    2891 days ago

  • FERMI

    ...i follows the overlap-layout-consensus paradigm and uses the FM-DNA-index (FMD-index) as the key data structure. It is inspired by the string graph assembler (Simpson and D...

    2757 days ago

  • Graph Genome Suite

    ...s research for cancer, drug development and precision medicine. We build self-improving systems to analyze millions of genomes, including the Graph Genome Suite — the...

    2708 days ago

  • Minia

    Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia produc...

    2667 days ago

  • SGA: String Graph Assembler

    SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation...

    2667 days ago

  • GAM-NGS: genomic assemblies merger for next generation sequencing

    ...) are identified through reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help of this weighted graph that allows an optimal&n...

    2656 days ago

  • Genome Assembly Tutorial

    ...ds. In contrast, real genomes often have long repetitive regions, and they are hard to assemble using overlap-consensus-layout approach. De Bruijn graph-based assembly approach was o...

    2655 days ago