Results for "Graph"
Users
Skills: Chromatography3515 days ago
- About me: My hobby is mainly People watching. I to learn French in my spare time. my website :: photography tipsWebsite: http://www.youtube.com/user/photographytipshub
3801 days ago
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Blogs
Five unique traits of effective computational biologist
...understand the complex biological mechanism. I highly recommend your to interact with biotech researchers and learn how do they explain their one graph (which they generally produce...3934 days ago
Five points for bioinformatics software/tools
...not the additional staff! Additionally, most of the functionality that you need in your analysis is already coded into the program. Need to plot a graph? Just click this button right...3692 days ago
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Bookmarks
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
...Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity amo...ific CNAs, and haplotype information to identify the optimal breakpoint graph representing cancer genomes....1080 days ago
RNA-Seq De novo Assembly Using Trinity
...e sequence data into many individual de Bruijn graphs, each representing the trans...a given gene or locus, and then processes each graph independently to extract full...nto clusters and constructs complete de Bruijn graphs for each cluster. Each clust...2949 days ago
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Files
Prepare for Coding Interview !
.../www. reddit.com/r/cscareerquestions/comments/206ajq/my_onsite_interview_experience_at_google/ #bottom-comments. 1. Data structures 2. Trees and Graph algorithms 3. Dynamic Progra...829 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...categories: string-based model and graph-based model. We therefore li...sm discovery. SAGE – String Graph Assembly of GEnomesSAGE ...RNA transcript sequences. StringGraph beta – String Graph Con...m-bandwidth paths in weighted read graphs and frequency estimation via...2670 days ago
Awesome perl frameworks, libraries and software - PART 2
...stein/Perl-GD - Perl GD module for bitmap graphics keiya/KeiSpade-CMS -...ntation in terms of AnyEvent agentzh/makefile-graphviz-pm - Perl CPAN module...rl-mysql - MySQL stats logging for Statsd/Graphite naoya/hadoop-streaming-fr...2478 days ago
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Top-level pages
- ...field that is may not be your strong point. Excel is fine for creating graphs. If you’re serious abo...search focuses on image informatics and scalable querying and mining of graphs.For more detail visit: ...
3930 days ago
- ...gger problem. Dynamic programming The shortest path in a weighted graph can be found by using the sho...uts. This can solve many problems such as the maximum flow for directed graphs, notably by using the simple...
3930 days ago
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Wire posts
News
BEReX : Biomedical Entity-Relation eXplorer
...rom these databases. Users search the integrated network by entering keywords and BEReX returns a sub-network matching the keywords. The resulting graph can be explored interactively...3824 days ago
- ...n Scalpel assembles an exon, it collects reads that map to that exon (including partial matches), splits them into k-mers, and creates a de Bruijn graph to span the exon; however, if...
3530 days ago
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Opportunity posts
Post-doc position at LABGeM - Evry, France
...of innovative bioinformatics methods to explore metabolic networks and enzyme families. These methods will be based on protein family analysis and graph approaches combining genomic...3052 days ago
11th International Joint Conference on Biomedical Engineering Systems and Technologies
...ilable biological data. Areas of interest to this community include systems biology, sequence analysis, biostatistics, image analysis, network and graph models, scientific data manag...2634 days ago
ResearchLabs posts
- Nataša Pržulj Lab's research involves applications of graph theory, mathematical modeling, and computational techniques to solving large-scale problems in computational and systems b...
3885 days ago
- Complex networks and network mining: developing graph theoretic, mathematical, and computational algorithms for efficient extraction of function from topology of complex real-world n...
3885 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
...ets will require not only faster computers; it will require smarter algorithms. We show how ideas from cutting-edge algorithms, including spectral graph theory and modern data struct...3886 days ago
Bio-Scripts
- # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2248 days ago
Estimate Genome Size with Jellyfish and R
jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? /common/Tutorial/Genome_estimation/sample_read_1.fastq /common/Tutorial/Genome_estimation/sample_rea...2230 days ago
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Tags
Comments
Comment on "Sibelia: A comparative genomics tool"
...ces file 2. Dot file with resulting de Bruijn graph All these files are descri...s down the computation. Resulting de Bruijn graph ------------------------- F...actually performed with the genome behind the graph model. Suppose that somewhe...1269 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...the kmer “noise” is part of the final assembly? What do you think contamination would look like in the kmer plot? What can the kmer graph tell you about the ploidy of...1321 days ago
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