Results for "HiC"

Tags

  • Hi-C browser http://hic.umassmed.edu/welcome/welcome.php#Browser #HiC #Genome #Interation

    Tags: HiC, Genome, Interation

    3235 days ago

  • 3D genome data and tool http://bengal.missouri.edu/~chengji/nsf_career.html #Chromosome #HiC #Analysis #Construction #Visualization #Modeling #3D #Genome #Structures

    Tags: Chromosome, HiC, Analysis, Construction, Visualization, Modeling, 3D, Genome, Structures

    3123 days ago

  • Centurion

    Although centromeres are essential for life and are the subject of extensive research, centromere locations in yeast genomes are difficult to infer, and in most species they are still unknown. Recently, the chromatin conformation assay Hi-C has been re-purposed for diverse applications, including...

    Tags: Bioinformatics, Centromere, Centurion, HiC, Annotation

    2968 days ago

  • HiCdat

    HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from aligned reads up to in-depth analyses. Importantly, HiCdat is focussed on the analysis of larger structural features of chromosomes, their correlation to genomic and epigenomic featu...

    Tags: Bioinformatics, HiC, Analysis, HiCdat, Annotation

    2968 days ago

  • QuIN’s web server

    Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal genomic locations can interact with each other via chromatin folding and affect gene expression levels. Genomic technologies for mapping interactions between DNA regions, e.g., ChIA...

    Tags: Bioinformatics, Analysis, Visualization, Chromatin, NGS, HiC

    2832 days ago

  • Genome Assembly Cookbook http://aidenlab.org/assembly/manual_180322.pdf #HiC #3D-DNA #Juicer

    Tags: HiC, 3D, Juicer

    2023 days ago

  • sim3C: Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)

    Required python modules biopython intervaltree numpy scipy tqdm PyYAML

    Tags: sim3C, Read-pair, simulation, 3C-based, sequencing, methodologies, HiC, Meta3C, DNase-HiC

    1963 days ago

  • Software tools for visualizing Hi-C data https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1161-y #HiC #3C

    Tags: HiC, 3C

    1681 days ago