Results for "Highly"

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  • dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.

    While the number of sequenced diploid genomes have been steadily increasing in the last few years, assembly of highly polymorphic (HP) diploid genomes remains challenging. As a result, there is a shortage of tools for assembling HP genomes from the next generation sequencing (NGS) data. The initi...

    Tags: dipSPAdes, Assembler, Highly, Polymorphic, Diploid, Genomes

    2290 days ago

  • Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.

    Meraculous is a whole genome assembler for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high accuracy of Illumina sequence by eschewing an explicit error correction step which we argue to be redundant with the assembly...

    Tags: Meraculous, Haplotype-sensitive, Assembly, Highly, Heterozygous, genomes, Meraculous-2D

    2290 days ago

  • flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses

    FlexiDot is a cross-platform dotplot suite generating high quality self, pairwise and all-against-all visualizations. To improve dotplot suitability for comparison of consensus and error-prone sequences, FlexiDot harbors routines for strict and relaxed handling of mismatches and ambiguous residue...

    Tags: Highly, customizable, ambiguity, aware, dotplots, visual, sequence, analyses, synteny

    1435 days ago