2582 days ago
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CISA: Contig Integrator for Sequence Assembly
...tool, named CISA, has been developed to integrate the assemblies into a hybrid set of contigs, resulting in...ith the assemblies generated by the state-of-the-art assemblers and the hybrid assemblies merged by existing...2660 days ago
Many-Core Engine (MCE) for Perl example
...ors for preserving output order. MCE::Mutex Provides a simple semaphore implementation supporting threads and processes. MCE::Queue Provides a hybrid queuing implementation for MC...2613 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
...orrect sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it use...2545 days ago
2504 days ago
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Unicycler: Hybrid assembly pipeline for bacterial genomes
...a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly....2331 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...lyses were based on multiple blastn searches with short sequence fragments. They revealed a number of probable bacterial contaminations as well as hybrid scaffolds that contain both b...2317 days ago