How to remove duplicates reads Ids ?
I mapped reads with bwa mem -M -t 40 allCombinedFinalSet.fa Seq.R1.fastq Seq.R2.fastq > aln.sam Extracted the mapped reads samtools view -f 0x2 -b aln.bam > output.bam Extracted the fastq bamToFastq -i output.bam -fq R1.fq -fq2 R2.fq grep @HISEQ578:1035:HJ2KCBCXX:1:1104...Tags: Reads, Ids, NGS, Fastq, Duplicates
2548 days ago
A script to convert Ensembl, Unigene, Uniprot and RefSeq IDs to Symbol IDs
Hello, I am looking for a program/function that converts different sources of IDs to Symbol IDs. The script in R will be an added advantage ... ThanksTags: Ensembl, Unigene, Uniprot, RefSeq, IDs, Symbol IDs Convert, R
3545 days ago