Results for "Illumina"
Top-level pages
List of pharmacogenomics companies worldwide
...www.tmdlab.com www.transgenomic.com www.twt.com www.uslabs.net www.variagenics.com Great Equipment Companies for Genomics www.affymetrix.com www.illumina.com www.iontorrent.com www.se...3906 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
..., 2010. PubMedCentral Biases in Illumina transcriptome sequencing caus...mizing PCR amplification bias in Illumina sequencing libraries. Aird et...t-a-glance quality assessment of Illumina second-generation sequencing...y with barcoding to allow use of Illumina sequencing to screen for retr...3763 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...doku.php?id=software:softwarePhyloSim An R package for the Monte Carlo simulation of sequence evolution http://bit.ly/rlsim-gitpIRS Profile-based Illumina pair-end reads simulator http...3721 days ago
Next generation sequencing in R or bioconductor environment
...high throughput sequencing technologies. While support is provided for many sequencing technologies, this package is primairly focused on Solexa/Illumina reads. Documentation Rsamtoo...3608 days ago
Commercial and public next-gen-seq (NGS) software
...neration sequence assembly of Illumina, Roche FLX and Sanger data in...reference genome. Written by Illumina author Anthony J. Cox for the...of paired-end and single-end Illumina reads. Uses a Needleman-Wunsc...designed for fast mapping of Illumina reads SNP/Indel Discovery ss...3503 days ago
- ...RNA prediction on UTRs : http://genie.weizmann.ac.il/pubs/mir07/mir07_prediction.html Idea of analysing miRNA Sequencing data : http://www.illumina.com/applications/epigenetics/...
3480 days ago
Software packages for next gen sequence analysis
...neration sequence assembly of Illumina, Roche FLX and Sanger data in...reference genome. Written by Illumina author Anthony J. Cox for the...of paired-end and single-end Illumina reads. Uses a Needleman-Wunsc...y short reads produced by the Illumina Genome Analyzer. Edena is bas...3226 days ago
- ...rt: fastq fasta fasta+qual sam scarf (an old Illumina format) bam (if samtools is i...led) gzip zip ascii-33 (sanger) ascii-64 (old Illumina) paired files interleaved fil...y that interleaving appears correct, assuming Illumina namimg conventions: reformat....
2698 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...s all major NGS technologies (Illumina, Ion Torrent, Pac Bio and Roc...LS & XLSX, CEL, CHP, CNT, Illumina, Plink PED, TPED, BED, Agilen...r Sequencng Input:paired-end Illumina reads from 1001 genomes proje...data from Complete Genomics, Illumina, SOLiD and VCF; Output: stan...2892 days ago
Genome Assembly Tools and Software - PART1 !!
...ifferent technologies (currently Illumina, 454 and Pacific Biosciences)...sed Variant Calling pipeline for Illumina Short Reads FermiKit is a&...notator was designed to assemble Illumina single or paired-end reads. R...bly of a dataset of paired 75-bp Illumina reads derived from the 15.4 m...2669 days ago
