Results for "Illumina"

Bio-Scripts

  • Downloading GATK !

    ...ls that process sequencing machine data, e.g. Illumina base calls, and detect sequen...ing level attributes, e.g. adapters CheckIlluminaDirectory (Picard)...Classify PF-Failing reads in a HiSeqX Illumina Basecalling directory into va...

    2038 days ago

  • Generate simulated polyploid genome !

    ...> toyheterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent.fasta > toyheterozygous3percent.fasta #generated 50X of Illumina paired-end reads sim_reads...

    2016 days ago

  • Simulate the reads !

    ...ic.fna_upper.diploid.fasta.gz \ illuminanames=t addslash=t \ pacbio=t...# make 60x haploid coverage for Illumina reads /genetics/elbers/bbmap...llumina2.fastq.gz > random_reads_illumina.log 2>&1 # interleav...ic.fna_upper.diploid.fasta.gz \ illuminanames=t addslash=t \ pacbio=t...

    891 days ago

  • Bash script to simulate a genome !

    ...ref=GCA_003401745.1_ASM340174v1_genomic.fna_upper.diploid.fasta.gz \ illuminanames=t addslash=t \ pacbio=t...ength=100000 \ out=/dev/null # make 60x haploid coverage for Illumina reads /genetics/elbers/bbmap...

    881 days ago