Illumina reveals first dataset of long reads
With the help of Moleculo technology , acquired by Illumina releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length is around 8,500 base pairs in release dataset. Best thing about this, there is not much effect on cost and quality of data. ...Tags: Illumina, Moleculo, long reads, sequencing
3893 days ago
Illuminating next generation sequencing data with Go
Another good lecture for Illumina sequencing data analysis from Dan Kortschak, Bioinformatics Group, School of Molecular and Biomedical Science ,The University of AdelaideTags: Illumina, sequencing, discordant read pairs, structural variation
3893 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill pr...Tags: shovill, Assemble, bacterial, isolate, genomes, Illumina, paired-end, reads
1204 days ago
Tags: Bioinformatics, Computational biology, Health, Illumina, Apps
3398 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied seq...Tags: Bioinformatics, NGS, RNA-seq, Assembly, Trinity, Illumina
2950 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseqTags: Bioinformatics, NGS, Assembly, Paired-End, PANDASEQ, Illumina
2936 days ago
Tags: Bioinformatics, NGS, Assembly, Paired-End, MIRA, Illumina
2936 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_paired.fq.gz output_reverse_unpaired.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 ...Tags: Bioinformatics, Trim, NGS, Illumina, Reads, Trimmomatic
2927 days ago
Tags: Bioinformatics, NGS, Assembly, Assembler, SPAdes, Reads, Illumina
2923 days ago
Tags: Bioinformatics, Assembly, PANDASEQ, Genome, NGS, Illumina
2644 days ago