Results for "Insertion"
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...ads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphism...2857 days ago
- ...ics: use `max_weight` for Maximum Weight Matching heuristics with the Insertion step, use `backbone` for Maximum Weight Matching heuristics without the Insertion step, use `greedy` for Greedy...
2683 days ago
- ...vergence between reference genome and assembled contigs is below 20% at nucleotide level. pyScaf deals with large rearrangements ie. deletions, insertion, inversions, translocations.&...
2677 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
...s. Among other features, the newly implemented methods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (iii) analyses on insertion/deletion polymorphism data; (...2629 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and ot...2530 days ago
Pollux: platform independent error correction of single and mixed genomes
...sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcting substitution errors, we locate and correct insertion, deletion, and homopolymer er...2527 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262506 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
...the latter case MGRA can reconstruct conserved ancestral regions (CARs) of the ancestral genome of interest. Since version 2 MGRA supports gene insertion and deletions in addition to...2460 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...ification of chromosomal homologous segments (CHS) within and between genomes is essential for comparative genomics. Various processes including insertion/deletion and inversion could...2343 days ago
- ...e end reads (SE) produced by next generation sequencing (NGS). It adopts a heuristic method in searching for local mapping signatures created by insertion/deletions (indels) or more co...
2137 days ago
