BOL: Results for "Insertion"

Results for "Insertion"

- Jit@jit.aber
Computer simulation of genetic mechanism !!
...ype Data for Pedigree Structures http://bioinformatics.org/simped/ Simprot A program to simulate protein evolution by substitution, insertion and deletion http://www.uhnre...
2958 days ago
- Surabhi Chaudhary@surabhi
BBTools for bioinformatician !
...rate is the number indicating substitution, insertion, or deletion (X, I, D). Ex...tations. You can specify the number of snps, insertions, deletions, and Ns per read,...tations. You can specify the number of snps, insertions, deletions, and Ns per read,...
2254 days ago

- Jit@jit.aber
WgSim
...ads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphism...
2856 days ago
- Jit@jit.aber
ScaffMatch
...ics: use `max_weight` for Maximum Weight Matching heuristics with the Insertion step, use `backbone` for Maximum Weight Matching heuristics without the Insertion step, use `greedy` for Greedy...
2683 days ago
+10 more Bookmarks

- Rahul Nayak@rahul
Useful Publications and Websites for Deep Sequencing Data Analysis
...ge Genome-wide LORE1 retrotransposon mutagenesis and high-throughput insertion detection in Lotus japonicus....ing to allow use of Illumina sequencing to screen for retrotransposon insertion mutations, and includes a sof...
3762 days ago
- Jit@jit.aber
List of generic simulation software/tools/resource with brief description and homepage !!!
...Genotype Data for Pedigree Structures http://www.hgsc.bcm.tmc.edu/content/simpedSimprot A program to simulate protein evolution by substitution, insertion and deletion http://www.uhnre...
3720 days ago
+5 more Top-level pages

- Shruti Paniwala@shruti
Scalpel
...bor Laboratory has released an algorithm, called Scalpel, for finding insertions and deletions in next genera...isalignment to the reference genome cannot obscure the presence of an insertion or deletion. Scalpel's innova...
3529 days ago
- Strand@Strand
Joint webinar by Agilent Technologies and Strand Life Sciences on 'Analysis of Variants using GeneSpring GX' on 6 Dec
...n of homozygous SNPs from Variant Call Format (VCF) file and for filtering based on heterozygous SNPs, multi-nucleotide polymorphisms (MNPs) and insertion-deletions (InDels). Multi-omi...
2346 days ago

- Rahul Nayak@rahul
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...ciently and accurately computationally identify variants. More recently, the analytic approaches have been extended to systematically identify insertion/deletion variation, transloca...
3853 days ago
- Rahul Nayak@rahul
Plasmids | Genetics | Biology
...nd animals. The program then goes on to look at the tools used by biotechnologists such as restriction enzymes, plasmids, vector and vector less insertion of genes into genomes, and th...
3787 days ago

- Shruti Paniwala@shruti
Perl script to insert the DNA string in genome
...my $file = $ARGV[0]; # input fasta file (genome file) my $out = $ARGV[1]; # output fasta file my $chr="test"; #insertion chromosome my $pos=10; # position of the insertion my $seqI = "AAAA"; #sequence...
2642 days ago
- Jit@jit.aber
Insert the sequence at desire location in multi-fasta file with Perl
#!/usr/bin/perl use warnings; use strict; use Bio::SeqIO; use Bio::Seq; use File::Copy; #ARGV[0] should be in following format --- Keep the coordinate sorted b...
2297 days ago

- BioStar@biostar
Comment on "Read Simulators"
...ing platforms, including Illumina, PacBio, and Oxford Nanopore. It can also simulate different types of sequencing errors, such as substitution, insertion, and deletion errors. dw...
398 days ago
- Jit@jit.aber
Comment on "LAMSA: fast split read alignment with long approximate matches"
...NT] Mismatch penalty for SW-alignment. [3] -O --open-pen [INT(,INT,INT,INT)] Gap open penalty for SW-alignment(end2end-global: insertion, deletion, one-end-extend: insertion, deletion). [5(,5,5,5)] -E --...
2106 days ago