Results for "Insertions"

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  • DiscoSnp

    DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads. The number of input read sets is not constrained, it can be one, two, or more. No reference genome is needed.

    58 days ago

  • MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

    ...hm. This method is well-suited to capture mismatches as well as short insertions and deletions. To support the...explicit support for handling known-sequence SVs, e.g. mobile element insertions (MEIs) as well as generating...

    606 days ago

  • NovelSeq: Novel Sequence Insertion Detection

    The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/20385726

    222 days ago

  • DIAL

    ...f a reference genome. DIAL works even when the depth of coverage is insufficient for de novo assembly, and it can be extended to determine small insertions/deletions. Our main motivatio...

    322 days ago

  • Stampy

    .... Stampy excels in the mapping of reads containing that contain sequence variation relative to the reference, in particular for those containing insertions or deletions.

    606 days ago

  • GenomeComp

    ...ng and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segmen...

    334 days ago

  • ACANA: An accurate and consistent alignment tool for DNA sequences

    ...es. ACANA is specifically designed for aligning sequences that share only some moderately conserved regions and/or have a high frequency of long insertions or deletions. It attempts to...

    42 days ago

  • segemehl

    ...l is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, s...

    617 days ago

  • GenomeRing: alignment visualization based on SuperGenome coordinates

    ...arative analyses of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangem...

    364 days ago

  • PRISM

    ...r split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions,...

    402 days ago