1180 days ago
2107 days ago
Install NCBI entrez-direct and esearch using conda !
$ conda install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda e...1064 days ago
Download genome using NCBI esearch command line !
...t fasta > seq1.fa esearch -db nucleotide -query "CP003784.1" | efetch -format fasta > seq2.fa #fastANI for alignment free comparision #conda install -c bioconda fastani fastAN...1064 days ago
1017 days ago
1017 days ago
1017 days ago
1017 days ago
Install Minimap2 using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda minimap2 Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1017 days ago
1017 days ago