Results for "Inversions"
Blogs
Computer simulation of genetic mechanism !!
...biological evolution http://abacus.gene.ucl.ac.uk/software/indelible/ invertFREGENE InvertFREGENE is a forward-in-time simulator of inversions in population genetic data ht...2965 days ago
Structural variation: the hidden genomic treasure
...such as deletions, insertions, duplications, inversions and translocations litter gen...al cases of adaptive evolution. For example, inversions have been associated with eco...(Large insertions, translocation, deletion, inversions....) Tools table: http...2693 days ago
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Bookmarks
- ...structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with...
2693 days ago
- ...tween reference genome and assembled contigs is below 20% at nucleotide level. pyScaf deals with large rearrangements ie. deletions, insertion, inversions, translocations. Note ho...
2684 days ago
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Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...simulator of biological evolution http://abacus.gene.ucl.ac.uk/software/indelible/invertFREGENE InvertFREGENE is a forward-in-time simulator of inversions in population genetic data ht...3727 days ago
Tools for Searching Repeats And Palindromic Sequences
...ndobucleases) designed to cut the DNA strands at specific locations (i.e., at palindromes). Palindromes may arise from brakeage and chromosomal inversions that form inverted repeats th...2202 days ago
Video
Bioinformatics -- Understanding of living systems through information science
...anism evolves, its genome sequence changes through sudden mutations. Additionally, at the genome level, mutations called rearrangements, such as inversions, transpositions, and duplicat...3907 days ago
Bio-Scripts
Create random 5 inversions in genome !
...min_size = 1000 The option inversion_max_size has been specified: inversion_max_size = 100000 [Sun Jan 10 16:30:40 2021] Introducing random Inversions based on the following parame...1201 days ago
Tags
Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amounts of genetic variation between individuals extending beyond single nucleotide polymorphisms (SNPs) and short indels. Structural Variations (SVs) and Copy Number Variations (CNVs) are a major source of genomic variation. However, compar...Tags: Bioinformatics, Chromosome, Genome, NGS, Structure Variation, Deletions, Insertions, Duplications, Inversions, Translocations
2693 days ago
Comments
- ...genome sequencing data. It is designed to simulate reads from large genomes and can handle complex genome structures, such as translocations and inversions. These are just a few ex...
406 days ago
Comment on "Sibelia: A comparative genomics tool"
...tion and [1]. The "loose" option produces longer blocks and better coverage, while "fine" can capture small-scale rearrangements, for example, inversions of size < 15 000 BP. The "...1275 days ago
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