2685 days ago
2676 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...of an early mammalian genome that accounts for 96.8% of the available human genome sequence data. The precision is further increased by mapping inversions as small as 31 bp. Analysis o...2526 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...ments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of th...2463 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...cannot be aligned linearly, enabling ngmlr to reliably align reads to a wide range of different structural variations including nested SVs (e.g. inversions flanked by deletions).2184 days ago
1914 days ago
simuG: a general-purpose genome simulator
...htweight tool for simulating the full-spectrum of genomic variants (single nucleotide polymorphisms, Insertions/Deletions, copy number variants, inversions and translocations) for any o...1602 days ago
Synteny and Rearrangement Identifier (SyRI)
...nd these alignments are then used as input to SyRI. SyRI identifies syntenic path (longest set of co-linear regions), structural rearrangements (inversions, translocations, and duplicat...1443 days ago
1420 days ago
PaReBrick: PArallel REarrangements and BReaks identification toolkit
...es diagrams of the neighbors for each block of interest, allowing the detection of horizontally transferred blocks or their extra copies and the inversions in which copied blocks are in...922 days ago