Results for "Inversions"
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...structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with...2693 days ago
- ...tween reference genome and assembled contigs is below 20% at nucleotide level. pyScaf deals with large rearrangements ie. deletions, insertion, inversions, translocations. Note ho...
2684 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...of an early mammalian genome that accounts for 96.8% of the available human genome sequence data. The precision is further increased by mapping inversions as small as 31 bp. Analysis o...2534 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...ments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of th...2471 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...cannot be aligned linearly, enabling ngmlr to reliably align reads to a wide range of different structural variations including nested SVs (e.g. inversions flanked by deletions).2192 days ago
- ...ulation data – SV lengths, read lengths, and the depth of coverage of short reads – with insertions, deletions, tandem duplications, inversions and single nucleotide alterat...
1922 days ago
simuG: a general-purpose genome simulator
...htweight tool for simulating the full-spectrum of genomic variants (single nucleotide polymorphisms, Insertions/Deletions, copy number variants, inversions and translocations) for any o...1610 days ago
Synteny and Rearrangement Identifier (SyRI)
...nd these alignments are then used as input to SyRI. SyRI identifies syntenic path (longest set of co-linear regions), structural rearrangements (inversions, translocations, and duplicat...1451 days ago
- ...variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a region, Inversions of a region, or Translocation...
1428 days ago
PaReBrick: PArallel REarrangements and BReaks identification toolkit
...es diagrams of the neighbors for each block of interest, allowing the detection of horizontally transferred blocks or their extra copies and the inversions in which copied blocks are in...930 days ago
