2914 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Un...mina, Applied Biosystems SOLiD, Roche 454, Ion Torrent and Pacific BioScienc...capture mismatches as well as short insertion...2869 days ago
Pollux: platform independent error correction of single and mixed genomes
...that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequen...lied to single- or mixed-genome data. In addition to correcting substitution er...correct 94% of Illumina MiSeq errors, 88% of Ion Torrent PGM errors, 85% of Roche 454 GS J...2506 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial gen...assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration...2502 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false...cing data of standard reference material showed up to ∼98% reduction of false variants when combined to convention...2289 days ago
REVIGO: Reduced Visualize gene ontology
REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remaining terms can be visualized in semantic similarity-base...2068 days ago