Results for "Ion PGM"
Bookmarks
MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/m...ng (aka Sanger sequencing) 454 pyro-sequencing (GS20, FLX or Titanium) Ion...2934 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Un...mina, Applied Biosystems SOLiD, Roche 454, Ion Torrent and Pacific BioScienc...capture mismatches as well as short insertion...2889 days ago
- +4 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...nger, 454, Solexa (Illumina), IonTorrent data and PacBio (the l...ng comparative genome information and paired-end reads. DISCOV...2.6.1 – A LASSO Regression Approach to RNA-Seq Based Tra...d-Read Iterative Contig Extension) is a de novo genome assemble...s an assembler of next generation...2669 days ago
Top-level pages
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of...hey occupy less space in memory with maximum information content. Link for those who...rge.net/SAMv1.pdf (from page 12) sff file (for Ion...3903 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...eq, Genome Browser, visualizations, Biological Interpretation, etc. Supports workflows &ldq...quencing data produced by the ION PGM™, Roche Junior, Illumin...: command-line program, detection of rare SNVs, relies upon Sam...ag) MultiBLUP Description: Package program, command lin...2892 days ago
Wire posts
Bio-Scripts
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pr...se BSD License: Redistribution and use in source and binary...OFITS; OR BU SINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY TH...n s them. If needed, instructions for removing the cuDNN binar...... installing: sortedcollection...1494 days ago
Tags
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also ...Tags: SIMBA, Web, Tool, Bacterial, Genome, Assembly, Ion PGM, Sequencing
2522 days ago
