Taverna Workflow Management System
...flows. Taverna has been created by the myGrid project and is funded through a range of organisations and projects. The Taverna suite is written in Java and includes the Taverna Engi...3868 days ago
Java and BioJava Tutorial links
BioJava provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of this bookmark is to provide useful links for bioinformatician. Please add more useful Java and BioJava links here ...3856 days ago
Java utilities for Next Generation Sequencing by Pierre Lindenbaum
Java utilities for Bioinformatics https://github.com/lindenb/jvarkit3472 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_pair...2895 days ago
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CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications and websites, or as a...2738 days ago
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DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...found within a single genome, segmental genome duplications can be revealed. This software distribution includes both the DAGchainer utility and a Java-based graphical interface tha...2586 days ago