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• • Jitendra Narayan@admin

  

  Java and BioJava Tutorial links

  BioJava provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of this bookmark is to provide useful links for bioinformatician. Please add more useful Java and BioJava links here ...

  Tags: Java, BioJava

  3893 days ago

• • Robert M Willioms@robert

  

  Java utilities for Next Generation Sequencing by Pierre Lindenbaum

  Java utilities for Bioinformatics https://github.com/lindenb/jvarkit

  Tags: Bioinformatics, Computational Biology, Java, Utilities #Tools #Scripts #Pierre

  3509 days ago

• • Abhimanyu Singh@abhimanyu

  

  GView: A Java application for viewing and examining prokaryotic genomes in a circular or linear context

  GView is a Java application for viewing and examining prokaryotic genomes in a circular or linear context. It accepts standard sequence file formats and an optional style specification file to generate customizable, publication quality genome maps in bitmap and scalable vector graphics formats. G...

  Tags: GView, Java, application, view, prokaryote, genomes, circular, linear, context

  2477 days ago

• • Robert M Willioms@robert

  

  DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing

  "DRAWID has number of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal measurement and idiogram drawing as well as number of useful functions facilitating the procedure of chromosome analysis," explain the scientists....

  Tags: DRAWID, user-friendly, Java, software, chromosome, measurements, idiogram, drawing

  2340 days ago

• • Jit@jit.aber

  

  Jvarkit : Java utilities for Bioinformatics

  Collection of Java tool kits for bioinformatics works: Jvarkit : Java utilities for Bioinformatics

  Tags: Bioinformatics, NGS, Java, toolkit, Genome, NGS, reads

  2147 days ago

• • LEGE@lege

  

  CGView.js is a Circular Genome Viewing tool

  CGView.js is a Circular Genome Viewing tool for visualizing and interacting with small genomes. This software is an adaptation of the Java program CGView. CGView.js is the genome viewer of Proksee, an expert system for genome assembly, annotation and visualization. Featu...

  Tags: CGView.js, Circular, Genome, Viewing, tool, visualize, interact, software, adaptation, Java, program, CGView

  28 days ago

• • Jit@jit.aber

  

  sankeyNetwork with networkD3

  You can also create Sankey diagrams with sankeyNetwork. Here is an example using downloaded JSON data: https://en.wikipedia.org/wiki/Sankey_diagram

  Tags: sankeyNetwork, networkD3, Visualization, Plot, java

  2210 days ago