Results for "Jitendra"
Bio-Scripts
BASH script for SelfBLAST a genome
...pecting you have blast and samtools installed in your system #Author: Jitendra Narayan #USAGE: ./selfBlast....SEQ=$FASTAFILE else echo "Something went wrong $USER - Contact jitendra" fi echo "Doing alignment...2642 days ago
Perl script to convert GFF 2 FASTA !
#!/usr/bin/perl use strict; use warnings; use Bio::Seq; use Bio::SeqIO; use Bio::DB::Fasta; $| = 1; # Flush output my $outfile_cds = Bio::SeqIO->new( -format...2129 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broa...gatk-4.0.2.1.zip’ saved [346889796/346889796] jitendra@jitendra-UNLOCK-INSTALL[gatk-...de a single string with space-separated values. jitendra@jitendra-UNLOCK-INSTALL[gatk-...
2065 days ago
- ...e4f1fe62ff1 Step 2/12 : FROM perl:latest ---> 82330051f9cb Step 3/12 : FROM bioperl/bioperl-deps ---> e890cc223da3 Step 4/12 : MAINTAINER "Jitendra Narayan" ---> Using cache...
1499 days ago
- ...e4f1fe62ff1 Step 2/16 : FROM perl:latest ---> de6996f7ef50 Step 3/16 : FROM bioperl/bioperl-deps ---> e890cc223da3 Step 4/16 : MAINTAINER "Jitendra Narayan" ---> Using cache...
1432 days ago
Install SibeliaZ in your Linux cluster !
(jitenv) jitendra@Bathymodiolus:~$ conda install -c bioconda sibel...Package Plan ## environment location: /home/jitendra/.conda/envs/jitenv added...ion: done Executing transaction: done (jitenv) jitendra@Bathymodiolus:~$ sibeliaz Yo...1223 days ago
- ...ttps://github.com/gpertea/gffread (jitENV) jitendra@Bathymodiolus:~$ conda instal...kage Plan ## environment location: /home/jitendra/.conda/envs/jitENV added...ransaction: done #Run as follows (jitENV) jitendra@Bathymodiolus:~$ gffread -w c...
1193 days ago
