2921 days ago
2695 days ago
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a stable, tested, documented version...2572 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...s. Incorporating fosmid ends recovers entire chromosomes. Meraculous relies on an efficient and conservative traversal of the subgraph of the k-mer (deBruijn) graph of oligonucl...2361 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k-mer frequencies. We evaluated our tool on 30× simulated pair...2332 days ago
Musket: a multistage k-mer spectrum based corrector
...ell-established leading next-generation sequencing read error correction algorithm targetting Illumina sequencing. This corrector employs the k-mer spectrum approach and introdu...2332 days ago
2326 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
Meraculous is a whole genome assembler for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high accuracy o...2318 days ago
2261 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate ma...ng the position of breakpoints stemming from structural variations. The k-mer search helps to detect and sp...2192 days ago