Results for "KEGG"

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  • Pathway Analysis tools ! http://cdwscience.blogspot.de/2013/03/bioinformatics-101-pathway-analysis.html #Pathways #KeGG #Reactome #GO

    Tags: Pathways, KeGG, Reactome, GO

    3475 days ago

  • Pathway Analysis

    Pathway Analysis is usually performed with aim to enrich the genes with their functional information and reveal the underlying biological mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set of expressed genes follow but also to disclose th...

    Tags: pathway enrichment, kegg, reactome, go, blast2go, RNA-Seq, RNA, Sequencing

    3458 days ago

  • https://elbe.hki-jena.de/fungifun/fungifun.php #fungi #Kegg #go

    Tags: fungi, Kegg, go

    3456 days ago

  • Tool: Gene Set Clustering based on Functional annotation (GeneSCF)

      -----------   Gene Set Clustering based on Functional annotation   GeneSCF serves as command line tool for clustering the list of genes given by the users based on functional annotation (Gene Ontology, KEGG, REACTOME and NCG 4.0). It requires gene list in the form of Entre...

    Tags: Functional annotation, real-time enrichment analysis, KEGG, GO, GeneOntology, REACTOME, cancer db

    2833 days ago

  • Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

    GeneSCF is more reliable compared to other enrichment tools because of its ability to use reference functional databases in real-time to perform enrichment analysis. It is an easy-to-integrate tool with other pipelines available for downstream analysis of high-throughput data. More importantly, G...

    Tags: Enrichment analysis, KEGG, Gene Ontology, REACTOME, pathways, cancer enrichment, Functional annotation, Gene enrichment

    2747 days ago

  • KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment

    KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment module). For Annotate module, it accepts gene list as input, including IDs or sequences, and generates annotations for each gene based on multiple databases about ...

    Tags: KOBAS, web, server, gene, protein, functional, annotation, functional, gene, set, enrichment, KEGG

    1987 days ago

  • KEGG Mapper – Reconstruct Pathway

    Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome and metagenome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms) annotated with KEGG Orthology (KO) identifiers or K numbers. Each line of the gene l...

    Tags: KEGG, Mapper, Reconstruct, Pathway, Bacteria

    1933 days ago

  • KOALA: KEGG's internal annotation tool for K number assignment of KEGG GENES using SSEARCH computation

    KOALA (KEGG Orthology And Links Annotation) is KEGG's internal annotation tool for K number assignment of KEGG GENES using SSEARCH computation. BlastKOALA and GhostKOALA assign K numbers to the user's sequence data by BLAST and GHOSTX searches, respectively, against ...

    Tags: KOALA, KEGG, annotation, tool, assignment, KEGG, GENES, SSEARCH, computation, Bacteria, Blast

    1933 days ago