Results for "LR"
Bio-Scripts
A multilayer perceptron (MLP) neural network in Perl
...xtra input in the training data #and set to 1 ################ User settings ######### my $numEpochs = 500; my $numHidden = 4; my $LR_IH = 0.7; my $LR_HO = 0.07; ###############...2905 days ago
Perl script to find palindromic regions in DNA sequences
use strict; use warnings; my $pp = qr/(?: (\w) (?1) \g{-1} | \w? )/ix; my $filename = $ARGV[0]; open(my $fh, '2143 days ago
Perl script to extract the uniq Ids
#!/usr/bin/perl -w use strict; use warnings; use List::Uniq ':all'; open(my $val, "2228 days ago
Perl script to read multi fasta sequence one by one
#!/usr/bin/env perl use strict; use warnings; #USAGE #perl rohanRun.pl seq.fa my $outfile='tmp.fa'; my $fastaSeq_ref = readfasta ("$ARGV[0]"); my %fastaSeq...2210 days ago
- # To follow these instructions, we'll assume your system admins have already installed these essentials: # Debian/Ubuntu system admins should run: sudo apt-get install -y build-es...
2133 days ago
Perl subroutine for reading multifasta file !
sub readfasta { (my $file)=@_; my %sequence; my $header; my $temp_seq; #suppose fasta files contains multiple sequences; open (IN, "2133 days ago
Perl script to find the distance beetween all the contigs and scaffolds
...e the distance beetween all the contigs and scaffolds #Usage: perl clustalReads.pl genome.fa > HammingDis...--maxiterate 0 --thread 40 $tmpFile > MAFFT_out"); #usage: perl clustalRead.pl MAFFT_out my ($seq...2129 days ago
Long reads mapper bash script !
...2.3_x64-linux/minimap2 bwaMemLoc=/home/urbe/anaconda3/bin/bwa ngmlrLoc=/home/urbe/Tools/ngmlr/bin/ngmlr-0.2.3/ngmlr lamsaL...ase specify reads type: ont, pacbio" fi elif [ $toolName == "ngmlr" ]; then echo "Mapping wi...2112 days ago
- ...5 -n 25 WadinetaGapFilled.gapfilled.iteration1.fa /home/urbe/DATA/OriginalReads/ANature/GC027568.151120_A...rocha.160226.HiSeq2000.FCB.lane1.gcap_dev.R1.fastq /home/urbe/DATA/OriginalReads/ANature/GC027568.151120_A...
2088 days ago
- ...git:(master) pip install pysam Requirement already satisfied: pysam in /home...git:(master) pip install networkx Requirement already satisfied: networkx in /h...eaf9b65cbef/PyIntervalTree-0.5.zip Requirement already satisfied: sortedcontaine...
2088 days ago
