Results for "LR"
Bookmarks
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession...3894 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...plines. We also encourage work in progress and research results in the emerging and evolutionary computational areas. Computational techniques have already enabled unprecedented adv...3482 days ago
- ...k with vast amount of data and very large file sets (~ 10,000 - 100,000). allows the selective retrieval of only the required files (file masks, ls-lR parsing, recursive search, up...
2609 days ago
WGS Celera Assembler version 8.3rc2
...3K Apr 10 11:41 overlapStoreIndexer-rwxrwxr-x 1 urbe urbe 48K Apr 10 11:41 overlapStoreSorter-rwxrwxr-x 1 urbe urbe 604K Apr 10 11:40 overmerrylrwxrwxrwx 1 urbe urbe &nbs...2566 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar genomes using genomes that have already been annotated. For example, when...2517 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
Ultimate tool for resolving repeats in genome assemblies. Though the specific implementation of the idea of the rectangle graph approach is already included into the current S...2304 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking DNA...pare their algorithm with others currently available. LRCstats benchmarks long read co...o-way alignments between the uncorrected long reads (uLR) and the corresponding sequen...2296 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...-cost alignMents for Long Reads (ngmlr) is a long-read mapper design...(complex) structural variations. Ngmlr uses an SV aware k-mer search...to compute the final alignment. Ngmlr uses a convex gap cost model...ot be aligned linearly, enabling ngmlr to reliably align reads to a...2186 days ago
- ...enomic regions to make the assembly result more longer and accurate. The simulated E.coli paired-end reads data are generated using GemSim (KE McElroy, F Luciani, T Thomas. Gemsi...
2145 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
FMLRC, or FM-index Long Read Corrector, is a tool for per...ta. Given a BWT of the short-read sequencing data, FMLRC will build an FM-index and u...st to other de Bruijn graph based implementations, FMLRC is not restricted to a parti...2078 days ago
