Results for "Lastz"
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LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designe...encing technologies such as Roche 454. More at http://www.bx.psu.edu/~rsharris/lastz/ Thesis: http://www.bx.psu.e...2924 days ago
YASS :: genomic similarity search tool
...produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses seeds t...2910 days ago
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Top-level pages
Some useful Bioinformatics links
...quences Reversed - Biology Stack Exchange https://biology.stackexchange.com/questions/8160/blast-dna-sequences-reversed LASTZ http://www.bx.psu.edu/miller_lab/dist/README.lastz-1.02.00/README.lastz-1.02.00a...2226 days ago
Bio-Scripts
Plot the clock using Lastz -gerenal outfile
use strict; use warnings; use Statistics::R ; use List::Util qw(sum); #Usage perl clockPlot.pl Palindrome.palfc 1500 my $R = Statistics::R->new() ; $R->startR...2284 days ago
Perl script to merge LastZ overlaps
#!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '2110 days ago
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Tags
- LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. More at http://www.bx.psu.edu/~rsharris/...
Tags: Bioinformatics, NGS, Comparative Genomics, Genome, LASTZ
2924 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genomes makes use of LASTZ (Harris et al), a pairwise sequence aligner compatible with BLASTZ....Tags: Bioinformatics, YASRA, Assembler, Reference, Lastz
2607 days ago
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Comments
- Understanding lastz http://www.bx.psu.edu/~rsharris/rsharris_phd_thesis_2007.pdf
2271 days ago
- The latest relase of LastZ at http://www.bx.psu.edu/~rsharris/lastz/newer/
2837 days ago
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