Results for "Lastz"

Bio-Scripts

  • Plot the clock using Lastz -gerenal outfile

    use strict; use warnings; use Statistics::R ; use List::Util qw(sum); #Usage perl clockPlot.pl Palindrome.palfc 1500 my $R = Statistics::R->new() ; $R->startR...

    2261 days ago

  • Perl script to merge LastZ overlaps

    #!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '

    2087 days ago

  • Identify genome-wide synteny with LASTZ alignment

    ...s the walkstrough how to identifiy genome-wide synteny markers based on LASTZ alignment. Step1:Mask the...xmall -lib custom.TE.lib_for_FF.fa FFChr1.txt Step2: Alignment using LASTZ and Chain/Net lastz AAChr1...

    479 days ago