Results for "Local"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
.../5.10.0/i386-linux-thread-multi/usr/lib/perl5/5.10.0/usr/local/lib/perl5/site_perl/5.10.0/i386-linux-thread-multi/usr/local/lib/perl5/site_perl/5.10.0/us.../5.10.0/i386-linux-thread-multi/usr/lib/perl5/5.10.0/usr/local/lib/perl5/site_perl/5.10.0/i3...3940 days ago
- ...ck to see if the following directories exist on your machine. Create the missing directories in the following manner:$ mkdir -p /usr/local/include$ mkdir -p /usr/local/bin$ mkdir -p /usr/local/lib$...
3930 days ago
- +14 more Blogs
Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found t...1136 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this p...the alignment.With our new approach we have reduced computation cost forlocal alignment , while achieving a...1136 days ago
- +57 more Bookmarks
Files
- ...-n 1 all_p_ctg.fa read.sai - | grep '\(^@\|XT:A:U\)' | /usr/local/bin/samtools view -S -h -b -F 0x4 - | /usr/local/bin/samtools sort -@ 20 -no -...eat.pl FALCON-Unzip-Scaff-with-repeat.bam repeat.dat | /usr/local/bin/samtools view - -h -S -b...
2141 days ago
Pages
- ...rely copy our data from several to local computer and visa-versa. I am...ene.txt" from a remote host to the local host $ scp...opy the file "foobar.txt" from the local host to a remote host &n...~Copy the file "gene.txt" from the local host to a remote host using p...
3691 days ago
A guide for complete R beginners :- Installing R packages
...ust install, however: if you are using Linux and don’t have root access, this command won’t work. you will be asked to select your local mirror, i.e. which server sho...3347 days ago
- +5 more Pages
Top-level pages
- ...sa.uiuc.edu/~workshop/Lab_3/Smith-Waterman.htm•http://www.tigem.it/LOCAL/SW/threshold.html•http:/...LTsurvey/ch1node34.html•http://www.ibc.wustl.edu/service/hmmalign/glocal.html•http://www.cse.ucsc...
3936 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...AD-seq for de novo assembly and marker design without available reference. Willing et al., Bioinformatics 27(16):2187-93, 2011. Publisher Website Local de novo assembly of RAD paire...3769 days ago
- +16 more Top-level pages
Wire posts
News
- ...unctional Theory: The Hohenberg-Kohn theorems; The Kohn-Sham equations; Local density and generalized gradi...theorem; Conceptual DFT: Fukui function; Global hardness and softness; Local hardness and softness; Electr...
3819 days ago
Update Genome Workbench 2.7.15 released
...ic data, and retrieve BLAST results. Genome Workbench is built on the NCBI C++ ToolKit and uses cross-platform APIs for graphics. It runs on your local machine, and is available for...3710 days ago
- +4 more News
Opportunity posts
Bioinformatics PhD studentship available in New Zealand
...plicants must have a BSc(Hons) or MSc degree in a relevant discipline and a willingness to learn and apply new techniques and work in a team. Both local and international students ar...3938 days ago
20th International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology (VEME)
...Telephone: +1-868-6452640 ext. 5009, +1-868-6848803 Fax: +1-868-6621873 E-mail: veme2015@sta.uwi.edu Deadline for receipt of applications by local organiser: 15 March 2015 CAL...3391 days ago
- +6 more Opportunity posts
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3898 days ago
Computer Theory & Genetics: George Chao at TEDxUMNSalon
...xUMN.com/ In the spirit of ideas worth spreading, TEDx is a program of local, self-organized events that b...combine to spark deep discussion and connection in a small group. These local, self-organized events are br...3905 days ago
- +7 more Video
Bio-Scripts
BioPerl to convert between sequence formats from Fasta to Genbank
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO->ne...2906 days ago
- #!/usr/local/bin/perl -w # Can be easily modified to run any command on every sequence in a folder # Directory of sequences $myDir = "/home/anjana/seqs"; # Output...
2906 days ago
- +36 more Bio-Scripts
Tags
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have reduced computation cost forlocal alignment , while ...Tags: Nucl2Vec, Local, alignment, DNA, sequences, Distributed, Vector, Representation
1136 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of the species. It combines refine and tba tool...Tags: Mulan, MUltiple, sequence, Local, AligNment, conservation, visualization, tool
2471 days ago
- +9 more Tags
Comments
Comment on "Basic command-line to run BLAST"
...earch. BLAST (Basic Local Alignment Search Tool) is a w...into the BLAST website or saved as a file for local searches. Choose the dat...be done online using the NCBI BLAST website or locally using the command-line inte...413 days ago
Comment on "Sibelia: A comparative genomics tool"
...tions close to their borders, they will be truncated. In case of two genomes, some synteny blocks (of multiplicity two) could be corrected using local alinment algorithms. Use flag...1275 days ago
- +7 more Comments
