Phylogenetic for Bioinformatics
...evolutionary connections between organisms are represented graphically through phylogenetic trees. Due to the fact that evolution takes place over long periods of time that cannot b...3909 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant...3742 days ago
Perl one-liner for bioinformatician !!!
...quo;g”,”c”)[rand 4] } 1..20'#Generates a 20 nucleotide long random residue.perl -le 'print "a"x50'#generate a string of ‘x’ 50 character longperl -le 'print join ", ", map...3591 days ago
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Genome Assembly Tools and Software - PART1 !!
...sembly Benchmark for Nanopore long reads DNA Assembly Bench...hort INDELs, but also retains long deletions, novel sequence ins...dash; Haplotype Assembly from Long Gapless Reads A fast and m...Celera and Phrap for typical longer reads by Sanger sequencing,...2648 days ago
Awesome perl frameworks, libraries and software - PART 1
...n - Expanded perl version of John Gruber's original Markdown --- No longer under active development si...ail_align - SailAlign is an open-source software toolkit for robust long speech-text alignment impleme...2452 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ntinuous assembly (fully resolved chromosome arms) from third-generation long and noisy reads (10 kbp) usin...h Software (Java) https://github.com/marbl/MHAP Miniasm Assembler of long noisy reads (SMRT, ONT) using...2334 days ago
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Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly...2293 days ago