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Results for "Long"

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• • Rahul Agarwal@raag

  

  Comment on "China’s BGI says it can sequence a genome for just $100"

  good news after long time. Illumina monoploy will end soon.

  1511 days ago

• • Rahul Nayak@rahul

  

  Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"

  Basic commands for genome assembly https://raw.githubusercontent.com/rrwick/Long-read-assembler-comparison/master/supplementary_figures/Fig_S04_commands.png

  1533 days ago

• • Rahul Nayak@rahul

  

  Comment on "Genome in a Bottle (GIAB) Consortium"

  ...omics and Health Benchmarking Team:Benchmarking tools, Manuscript, GitHub Sequencing Data:Data and analyses from most short, linked, and long read sequencing methods are p...

  1544 days ago

• • Jit@jit.aber

  

  Comment on "Long read assembly workshop !"

  Long reads base bacterial genome assembly https://inf-biox121.readthedocs.io/en/2016/Assembly/practicals/07_Assembly_using_minasm+racon.html

  2023 days ago

• • Rahul Nayak@rahul

  

  Comment on "Long read assembly workshop !"

  Long reads assembly PPT https://www.msi.umn.edu/sites/default/files/Badalamenti_PacBio_tutorial_12-10-2014.pdf

  2023 days ago

• • Rahul Nayak@rahul

  

  Comment on "Long read assembly workshop !"

  Long reads assembler https://zenodo.org/record/345098/files/scientific_reports_assembly_long_reads%282%29.pdf

  2023 days ago

• • Jit@jit.aber

  

  Comment on "HALC: High throughput algorithm for long read error correction"

    Inputs Long reads in FASTA format. Contigs assembled from the corresponding short rea...ight_reads.fa >>short_reads.fa). Using AlignGraph runHALC.py long_reads.fa contigs.fa [-options...

  2075 days ago

• • Rahul Nayak@rahul

  

  Comment on "CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing."

  ...for you. minReadLength=number - Ignore reads shorter than 'number' bases long. Default: 1000. minOverlapLength=number - Ignore read-to-read overlaps shorter than 'number' bases long. Default: 500. A full list of...

  2083 days ago

• • Jit@jit.aber

  

  Comment on "MashMap: a fast and approximate software for mapping long reads (PacBio/ONT) or assembly to reference genome(s)"

  ➜ mashmap-Linux64-v2.0 git:(master) ✗ ./mashmap -h-----------------Mashmap is an approximate long read or contig mapper based on Jaccardsimilarity-----------------Example usage:$ mas...

  2106 days ago

• • Poonam Mahapatra@poonam

  

  Comment on "CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing."

  Canu is one of the best de novo assemblers available for long reads - it’s a fork and updated ve...ecoli_sample/ecoli_sample.template.fasta This one will take a bit longer ;)

  2159 days ago

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