Results for "Long"

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  • http://bioinfo.life.hust.edu.cn/lncRNASNP/ #long #noncodingRNA #SNP

    Tags: long, noncodingRNA, SNP

    683 days ago

  • http://www.lncrnadb.org/ #long #noncodingRNA #DB

    Tags: long, noncodingRNA, DB

    683 days ago

  • FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads

    FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.

    Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, Long, FinisherSC

    85 days ago

  • PBSuite: Software for Long-Read Sequencing Data from PacBio

    PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads.----- PBJelly -----Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768PBJelly is a highly autom...

    Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, Long, Improve, PBSuite, PBJelly, PBHoney

    85 days ago

  • Software and Tools to detect structure variation with long reads !!

    Uncovering the connection between genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio de novo assembly resolves the most novel SV variants. 8-10X PacBio coverage of single genomes or trios reveals triple the SVs ...

    Tags: Bioinformatics, LR, Long, Reads, Tools, Software, Pacbio, Genome, DNA, Sequence, NGS, SV, Variation, Structure

    69 days ago

  • LoRDEC: a hybrid error correction program for long, PacBio reads

    LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read set, whose error rate is assumed to be small, and ...

    Tags: Bioinformatics, LoRDEC, Hybrid, Error, Correction, Program, Long, PacBio, Reads, Illumina

    44 days ago

  • DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies

    DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies Our work is published in Scientific Reports: Ye, C. et al. DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologi...

    Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, Long, DBG2OLC

    34 days ago

  • BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly

    This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap-filling. If you encounter any issues, please contact me at kklam@eecs.berkeley.edu. My name is Ka-Kit Lam. https://github.com/kakitone/MetaFinisherSC ht...

    Tags: BIGMAC, Breaking, Inaccurate, Genomes, Merging, Assembled, Contigs, Long, Read, Metagenomic, Assembly

    2 days ago