RAMICS substantially outperforms other mapping approaches for alignment of coding DNA to reference sequences. http://hiv.sanbi.ac.za/tools#/ramics #Tools #Alignment #NGS #RAMICS
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences http://www.biomedcentral.com/1471-2105/6/156/ #Align #Genome
FeatureStack: Perl module for comparative visualization of gene features http://bioinformatics.oxfordjournals.org/content/28/23/3137.long #Perl #Module #Visualization #Gene