Results for "LongReads"

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  • Live webinar on long reads! http://programs.pacificbiosciences.com/l/1652/2014-06-16/2w46dr #PacBio #LongReads #NGS #Omics #Seq

    Tags: PacBio, LongReads, NGS, Omics, Seq

    3565 days ago

  • Long-read human genome sequencing and its applications https://www.nature.com/articles/s41576-020-0236-x #LongReads #Sequencing #Genome #Review

    Tags: LongReads, Sequencing, Genome, Review

    1389 days ago

  • Understanding PacBio

    This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for both beginners and experts. Below are links to training modules (webinars and PowerPoint presentations) to help you get started with your data processing, as well as...

    Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, LongReads, Reads

    2589 days ago

  • Pacbio Long Reads Compatible Software and Tools

    The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All packages are believed to be open source or freely available for non-commercial use. See the individual project sites for up-to-date license information. A se...

    Tags: Bioinformatics, Chromosome, Genome, NGS, Align, LongReads, LR, Reads, Pacbio

    2570 days ago

  • PacBio genome assembly tools https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbx147/4590140 #PacBio #Assembly #Tools #SMRT #LongReads

    Tags: PacBio, Assembly, Tools, SMRT, LongReads

    2121 days ago

  • Long Reads ( pacbio and nanopore) correction https://www.pacb.com/asset_tags/error-correction/ #PacBio #Error #Correction #LongReads

    Tags: PacBio, Error, Correction, LongReads

    2047 days ago

  • CANU genome assembly parameters !

    Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two cores (parameter -maxThreads=2) and you would like to disable cluster option, since we compute on a single Amazon server set off the option to compute on cluster useGrid=false...

    Tags: CANU, genome, assembly, parameters, NGS, LongReads, OLC

    1907 days ago

  • NextDenovo: string graph-based de novo assembler for TGS long reads

    NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significantly less computing resources and storages. After assembly, the per-base error rate is about 97-98%, to further improve single base ...

    Tags: NextDenovo, NextOmics, string, graph-based, de novo, assembler, TGS, LongReads, assembly, long, reads

    1545 days ago

  • getopts.pl file

    SSPACE_longread complain for getopts.pl file. To resolve this, download and have in SSPACED-Longreads folder. Cheers :)

    Tags: SSAPCE, LongREads, SSPACE-Longreads, Scaffolding, error, getopts, perl, genome

    2114 days ago

  • HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning

    HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error correction framework that determines a correction policy for erroneous long reads, based on optimal combinations of decision weights obtained from short read alignments.  HECIL’s core algorithm by introdu...

    Tags: HECIL, Hybrid, Error, Correction, Algorithm, Long, Reads, Iterative, Learning, longreads

    1913 days ago