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Results for "MCscan"

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• • Bulbul@bulbul

  

  MCscan

  MCscan is a computer program that can simultaneously scan multiple genomes to identif...cross different genomes. More at http://chibba.agtec.uga.edu/duplication/mcscan/

  2675 days ago

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• • Bulbul@bulbul

  

  MCscan

  MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. This is the toolset for generating the synteny correspondences in Plant Genome Duplication Database. It is intend...

  Tags: Bioinformatics, Analysis, NGS, Genome, Synteny, Homology, MCscan

  2675 days ago

• • Jit@jit.aber

  

  JCVI utility libraries

  Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.

  Tags: MCscan, pipeline, synteny, plant, annotation, comparative genomics, jcvi

  1076 days ago

Comments

• • Jit@jit.aber

  

  Comment on "collinearity: scripts to parse and analyse MCScanX collinearity output"

  This python script is by far the best for MCscan https://github.com/tanghaibao/jcvi/wiki/MCscan-(Python-version)

  1494 days ago

• • Shruti Paniwala@shruti

  

  Comment on "Tools to detect synteny blocks regions among multiple genomes"

  Thanks for such an informative blog. I notice MCScan is missing. MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. More at http://www.ncbi.nlm.nih.gov/pubmed/22217600

  3657 days ago