Results for "MD"
Bio-Scripts
Blast script to index and extract sequence !!
...ut EC -in EC4115.fa -parse_seqids # retreive an entry by id $ blastdbcmd -db EC -entry 'NC_011353.1' |...AGAC .... # query the blast database by id and coordinates $ blastdbcmd -db EC -range 100-105 -entry...2837 days ago
Perl script to find palindromic regions in DNA sequences
use strict; use warnings; my $pp = qr/(?: (\w) (?1) \g{-1} | \w? )/ix; my $filename = $ARGV[0]; open(my $fh, '2139 days ago
- ...loomFilterUtil.h KmerBloomFilter.hpp README.md BloomMap.hpp Makefile.am...bloomfilter' /usr/bin/install -c -m 644 README.md '/home/urbe/Tools/bloomfilter...bloomfilter' /usr/bin/install -c -m 644 README.md '/home/urbe/Tools/bloomfilter...
2136 days ago
- ...ch stats file by read name. CMD: /usr/bin/sort --parallel=40...y_out_dir/both.fa * Running CMD: /home/urbe/Tools/trinityrnas...nday, July 9, 2018: 11:17:42 CMD: mkdir -p /home/urbe/Tools/tr...nday, July 9, 2018: 11:18:30 CMD: mkdir -p /home/urbe/Tools/tr...
2112 days ago
- ...-static.dir/internal/index/BamToolsIndex_p.cpp.o [ 37%] Building CXX object lib/bamtools-2.3.0/src/api/CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o [ 38%] B...
2084 days ago
Installing Busco version 4.0.6
...conda/linux-64::perl-file-temp-0.2304-pl526_2 perl-getopt-long bioconda/linux-64::perl-getopt-long-2.50-pl526_1 perl-ipc-cmd bioconda/linux-64::perl-ipc-cmd-1.02-pl526_0 perl-json-pp...1438 days ago
- ...Converts a SAM or BAM file to FASTQ. SetNmAndUqTags (Picard) DEPRECATED: Use SetNmMdAndUqTags instead. SetNmMdAndUqTags (Picard)...
2060 days ago
- ...+- plugins/bgnotify/README.md...9 +++ plugins/dotenv/README.md...story-substring-search/README.md | 6 +- plugi...de 100644 plugins/jenv/README.md create mode 100644 plugins/...
2060 days ago
- (denovo_asm) [jnarayan@hmem00 ~]$ git clone https://github.com/cdunn2001/git-sym.git fatal: destination path 'git-sym' already exists and is not an empty directory....
2019 days ago
- ...tslib-1.9/m4/hts_prog_cc_warnings.m4 htslib-1.9/md5.c htslib-1.9/multipart.c h...c htslib-1.9/test/hts_endian.c htslib-1.9/test/md#1.sam htslib-1.9/test/md.fa...mod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o real...
2004 days ago
