Results for "MIRA"
Blogs
Protocol for De novo Genome Assembly using Illumina Reads
...rt-read assemblers are available. Everyone with strengths and disadvantages of their own. Some of the assemblers available include:VelvetSOAP-denovoMIRAALLPATHS Next step is to asse...1189 days ago
Bookmarks
- MIRA is a multi-pass DNA sequence data asse...whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained b...er assemblies (a simple mapping). The MIRA acronym stands for Mimicking...h manual work into it. More at http://mira-assembler.sourceforge.net/doc...
2935 days ago
MITObim - mitochondrial baiting and iterative mapping
...icle if you are using MITObim in your work. The pipeline was originally developed for Illumina data, but thanks to the versatility of the MIRA assembler, MITObim supports i...2173 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...ore than 8 million reads in an hour at full sensitivity to 2 mismatches MIRA 4.0.2 – Whole Genome Shotgun and EST Sequence AssemblerMIRA (Mimicking Intelligent R...2670 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...hort read de novo assembly. By Mark J. Chaisson and Pavel A. Pevzner from UCSD (published in Genome Research). Uses a de Bruijn graph approach. MIRA2 - MIRA (Mimicking Intelligent Read A...3503 days ago
Software packages for next gen sequence analysis
...rt read de novo assembly. By Mark J. Chaisson and Pavel A. Pevzner from UCSD (published in Genome Research). Uses a de Bruijn graph approach. * MIRA2 - MIRA (Mimicking Intelligent Read A...3227 days ago
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Wire posts
Bio-Scripts
Resume the MIRA assembler run !
mira -r manifest_file Usage: mira [options] manifest_file [manifest_file ...] Options: -c / --cwd= directory Change working directory -r / --resume...1719 days ago
Tags
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophoresis sequencing (aka Sanger sequencing) 454 pyro-sequencing (GS20, FLX or Titanium) Ion Torrent Solexa (Illumina) sequencing ...
Tags: Bioinformatics, NGS, Assembly, Paired-End, MIRA, Illumina
2935 days ago
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Comments
Comment on "Sequence assembly with MIRA 4"
MIRA5 is ready to use http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html1518 days ago
