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Results for "MIRA"

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• • Priya Singh@priyasingh

  

  Sequence assembly with MIRA 4

  MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophoresis sequencing (aka Sanger sequencing) 454 pyro-sequencing (GS20, FLX or Titanium) Ion Torrent Solexa (Illumina) sequencing ...

  Tags: Bioinformatics, NGS, Assembly, Paired-End, MIRA, Illumina

  2940 days ago

• • Jit@jit.aber

  

  MiraConvert http://manpages.ubuntu.com/manpages/xenial/man1/miraconvert.1.html #MIRA #Assembler #Convert

  Tags: MIRA, Assembler, Convert

  2694 days ago

• • Jit@jit.aber

  

  Genome assembly tutorial http://marinetics.org/teaching/hts/Assembly.html #assembly #Tutorial #MIRA #IonTorrent

  Tags: assembly, Tutorial, MIRA, IonTorrent

  2580 days ago

• • Bulbul@bulbul

  

  How to resolve following error in MIRA?

  Looking for files named in data ...Pushing back filename: "clean_a2017.R1.fq"Could not determine filetype from data 'clean_Avaga2017.R1.fq' ("clean_a2017.R1.fq")Pushing back filename: "clean_a2017.R2.fq"Could not determine filetype from data 'clean_a2017.R2.fq' ("clean_a2017.R2.fq")Fatal error (m...

  Tags: Bioinformatics, MIRA, Error, Filetype

  2556 days ago

• • Priya Singh@priyasingh

  

  How to redirect MIRA temporary file to non-NFS mounted location ?

  I run MIRA on my dataset and got the following error. I have /tmp directory mounted on non-NFS protocol. I wanted to use it for temporary location. How to do that? Sorry, M new to MIRA. WARNING WARNING WARNING! It looks like the directory MIRA uses for temporary files /home/user/MIRA/mira_4.0...

  Tags: MIRA, TMPDIR, tmp, Redirect, Mount, Run, NFS

  2541 days ago

• • Neelam Jha@neelam

  

  How MIRA follows for the ref based assembly?

  MIRA follows for the ref based assembly (like mapping the reads on the reference with xxx, etc.) and if its possible to have a figure with the workflow.

  Tags: Mira, Assembly, Flow, Workflow, Reads

  2847 days ago