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Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic rese...2895 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E....
2154 days ago
- JSON (JavaScript Object Notation) is a lightweight data-interchange format. It is easy for humans to read and write. It is easy for machines to parse and generate. It is based on...
2576 days ago
CABOG: Celera Assembler with Best Overlap Graph
...rograms exist to overcome the fundamental limitation of all sequencing machines, namely, that they read out v...It was first to combine reads from first-generation Sanger sequencing machines and second-generation pyroseq...2535 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-cla...2456 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-calling software. By default, observations only incorp...2338 days ago
LRCstats: Long Read Correction Statistics
...n-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific Bioscienc...2300 days ago
LRCstats: a tool for evaluating long reads correction methods
...n-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific Bioscienc...2071 days ago
