Results for "Maf"

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  • MafFilter: a highly flexible and extensible multiple genome alignment files processor http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3904536/ #MultipleGenomeAlignment #MAF #Genome #Alignment

    Tags: MultipleGenomeAlignment, MAF, Genome, Alignment

    3516 days ago

  • mafTools

    Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

    Tags: Bioinformatics, MAF, mafTools, Alignment, Multiple

    2868 days ago

  • Convert MAF file format http://last.cbrc.jp/doc/maf-convert.html #MAF #Convert #Format

    Tags: MAF, Convert, Format

    2515 days ago

  • MAF2Synteny https://github.com/fenderglass/maf2synteny #Convert #Synteny #MAF #Ragout

    Tags: Convert, Synteny, MAF, Ragout

    2515 days ago

  • maf2synteny

    A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat) This tool is a standalone version of Ragout module [http://fenderglass.github./Ragout]

    Tags: Tool, Conversion, Recover, Synteny, Blocks, Multiple, Alignment, MAF, Format, maf2synteny

    2507 days ago

  • maftools : Summarize, Analyze and Visualize MAF Files

    With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers with sample size of each cancer type being over 200. Resulting ...

    Tags: maftools, Summarize, Analyze, Visualize, MAF, Files

    1192 days ago

  • MafTools

    maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas Project has seqenced over 30 different cancers with sample...

    Tags: Bioinformatics, Maf, Tools, MafTools, Paint, Plot, Read

    2598 days ago

  • maftools

    With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers with sample size of each cancer type being over 200. Resulting data consisting of somati...

    Tags: maftools, maf, format, snp, variant, genome, mutation

    833 days ago

  • vcf2maf convert !

    To convert a VCF into a MAF, each variant must be mapped to only one of all possible gene transcripts/isoforms that it might affect. But even within a single isoform, a Missense_Mutation close enough to a Splice_Site, can be labeled as either in MAF format, but not as both. This selection of a si...

    Tags: maftools, maf, vcf2maf, convert, format

    833 days ago