Results for "Mapping"
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Next Generation Sequencing (NGS) Tutorials
...8/2/284?etoc RseqFlow: Workflows for RNA-Seq data analysis DOI: 10.1093/bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Ge...3477 days ago
Latest paper on comparison of mapping tools
...D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14...http://bioinformatics.oxfordjournals.org/content/28/24/3169 Some new Mapping tool links: GSNAP http://re...3886 days ago
- "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool link: http://www.cs.cmu.edu/~ckingsf/software/sailfish/
3652 days ago
irishgrid: Irish Grid Mapping System
Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format. Originally design to map the location of objects in a 10...3407 days ago
Assembly and diploid architecture of an individual human genome via single-molecule technologies
...ssembled genomes that approach reference quality. https://www.genomeweb.com/sequencing-technology/researchers-combine-single-molecule-sequencing-mapping-technologies-analyze3210 days ago
- ...ologies either in a single assembly run (a true hybrid assembly) or by mapping one type of data to an assembly of other sequencing type (a semi-hybrid assembly (or mapping)) or by mapping a data agains...
2940 days ago
REAPR: a universal tool for genome assembly evaluation
...mbly based on the error calls. The software requires as input an assembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information such as the fragm...2940 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...ing and storing sequencing files (your own data or from public sources) Checking sequence quality, trimming, general sequence manipulation Mapping reads to a reference genome...2920 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...stable, sensitive and open-source program for mapping second and third-generation s...to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads...IK was the only aligner to provide consistent mappings for all the generated data (...2896 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference g...e for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that cont...
2896 days ago
