Results for "Mapping"

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  • OMTools: a software package for visualizing and processing optical mapping data

    OMTools, an efficient and intuitive data processing and visualization suite to handle and explore large-scale optical mapping profiles. OMTools includes modules for visualization (OMView), data processing and simulation. These modules together form an accessible and convenient pipeline for optica...

    Tags: OMTools, software, package, visualizing, processing, optical, mapping, data

    1827 days ago

  • When to use bbmap ?

    I recently came across bbmap. When to use it ?

    Tags: bbmap, mapping, pe, reads

    1411 days ago

  • bowtie2-align-s: error while loading shared libraries

    /home/emilyw/.conda/envs/shotgun_134/bin/bowtie2-align-s: error while loading shared libraries: libtbb.so.2: cannot open shared object file: No such file or directory (ERR): Description of arguments failed! Exiting now ... How to resolve this ? 

    Tags: bowtie2-align, error, bowtie2, mapping

    833 days ago

  • VCF Compare !

    compare two BWA mapping methods with the online hg18-mapped data We first operate a rapid inspection of the different BAM files using samtools flagstat. Illumina provided chr21 read mapping obtained with their GA IIx deep sequencing platform <ftp://webdata:webdata@uss...

    Tags: bwa, mapping, genome, vcf, align, genome

    799 days ago

  • Scientists map 17,294 proteins produced in human body

    Indian scientists missed the genomic profiling bus, but they've more than made up for it by creating the first human proteome map which is an extension of the genomic study. Till now, here is no direct equivalent for the human proteome. But recently two groups present mass spectrometry-based anal...

    Tags: Bioinformatics, Computational Biology, IOB, Protein, Mapping

    3592 days ago

  • How to sequence the human genome - Mark J. Kiel

    View full lesson: http://ed.ted.com/lessons/how-to-sequence-the-human-genome-mark-j-kiel Your genome, every human's genome, consists of a unique DNA sequence of A's, T's, C's and G's that tell your cells how to operate. Thanks to technological advances, scientists are now able to know the sequen...

    Tags: Bioinformatics, Computational Biology, Genome, Sequencing, NGS, Mapping

    3590 days ago

  • Maq: Mapping and Assembly with Qualities http://maq.sourceforge.net/ #Maq #Mapping #Assembly #Qualities

    Tags: Maq, Mapping, Assembly, Qualities

    3545 days ago

  • LAST

    LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate th...

    Tags: LAST, Bioinformatics, Mapping, Match, Align, Sequences, Compare

    2941 days ago

  • Comparison of mapping tools !

    There are many mapping tools, and each one has its own specifications. Once we have two or more tools for similar purposes, how can we say which tool is better?

    Tags: NGS, Mapping, Sequencing

    2930 days ago

  • #Mapping #sequencing #reads to a #reference #genome with #Bowtie2: a step-by-step guide https://insidedna.me/tutorials/view/how-to-use-bowtie2-read-mapping

    Tags: Mapping, sequencing, reads, reference, genome, Bowtie2

    2937 days ago