Results for "Matrix"
Blogs
Basic command-line to run BLAST
...ap float_value] [-xdrop_gap_final float_value] [-searchsp int_value] [-sum_stats bool_value] [-seg SEG_options] [-soft_masking soft_masking] [-matrix matrix_name] [-threshold float_value...2234 days ago
List of motif discovery tools !
...rning Web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix. PPISearch -- Protein-Pr...1983 days ago
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Bookmarks
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...elling shifts of environmental conditions over time. The dispersal matrix describing the movement of individuals among sub-populations can be replaced by a connectivity matrix and a reduced dispersal matri...2762 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RN...1115 days ago
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Files
2895 days ago
Pages
Awesome perl frameworks, libraries and software - PART 2
...e, Perl oriented client interface to Apache Cassandra. fayland/perl-app-github - App::GitHub CPAN module eserte/cpan-testers-matrix - the code behind matrix.cpantesters.org dnmfarrell/S...2484 days ago
Awesome perl frameworks, libraries and software - PART 4
...mplate language yasuaki/git-doc-ja - Japanese translation of git/Documentation/ xdata-skylark/libskylark - Sketching-based Distributed Matrix Computations for Machine Lear...2484 days ago
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...etID files Gene reference file: Ensembl Release 75 Output: covariance matrix for regression models mt...ing factors ex. relatedness Input: sample-to-sample genetic covariance matrix needs to be computed; multipl...2898 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...nical and environmental samples Web service http://taxonomer.iobio.io/ Other d2-tools Word-based (k-tuple) comparison (pairwise dissimilarity matrix using d2S measure) of metatra...2361 days ago
Wire posts
News
- ...bugging purposes. crossprod(x, y) allows more matrix coercions when x or y are vec...apply(m, 2, identity) is now the same as the matrix m when it has named row names...ackage tools, tailored to package titles. The matrix methods of cbind() and rbind(...
3295 days ago
Opportunity posts
Sr. Scientist Bioinformatics Vacancies at Indian Institute of Toxicology Research, India
...September 21, 2020 17:30 Hrs IST Last date of Receipt of physical copy of application at CSIR-IITR: Tuesday October 05, 2020 17:30 Hrs IST Pay Matrix Level-12 No. of Post-01 (UR...1332 days ago
ResearchLabs posts
- The major research interests are in exploring the role of extracellular matrix components (soluble secreted proteins and membrane vesicles) in cancer and intercellular communication....
3869 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3898 days ago
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3885 days ago
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
...tatement die "usage: $0 \n" unless @ARGV == 4; # get sequences, matrix and gapcost from command line...or any gap my %BLOSUM50 = (); my @aalist = (); # read substitution matrix open in, $smfile; while(){...2895 days ago
- #USAGE: CI_normal(matrix[,c(x:y)],97.5) - multiple column from a normal distribution #USAGE: CI_tdist(matrix[,c(x:y)],97.5) - multiple column from a t distribution #USAGE: CI_normal(matrix[,x],97.5) - single column fro...
2861 days ago
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Comments
Comment on "RPKM normalization - Perl"
Usage: perl rpkm_script_beta.pl sample_count_test.count 2:9 28 > sample_count_test.rpkm Colum1 in the input matrix is gene name, column 2 to 9 samples with corresponding counts an...2861 days ago
Comment on "Bio++ : C Language libraries for your biological need"
...n.Bio++ Suite contains the following components:bppPars (Optimize a phylogenetic tree according to maximum parsimony).bppDist (Estimate a distance matrix and build a phylogenetic tree...3816 days ago
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