Results for "MetaGenome"


  • VirMet

    Watch out: only a few files are counted in coverage statistics. Full documentation on Read the Docs. A set of tools for viral metagenomics. virmet is called with a command subcommand syntax: virmet fetch --viral n, for example, downloads the bacterial database. Other available subcom...

    Tags: Bioinformatics, Analysis, NGS, VirMet, Genome, MetaGenome

    171 days ago


    Metagenomics sequencing projects collect samples of DNA from uncharacterized environments that may contain hundreds or even thousands of species. One of the main challenges in analyzing a metagenome is phylogenetic classification of raw sequence reads into groups representing the same or similar ...

    Tags: Bioinformatics, Analysis, NGS, PHYMMBL, Genome, MetaGenome, Classification, Reads

    171 days ago

  • GroopM: Metagenomic binning toolset

    GroopM is a metagenomic binning toolset. It leverages spatio-temoraldynamics (differential coverage) to accurately (and almost automatically)extract population genomes from multi-sample metagenomic datasets. GroopM is largely parameter-free. Use: groopm -h for more info. For installation and us...

    Tags: Bioinformatics, Analysis, Assembly, Genome, GroopM, Metagenome, Binning

    23 days ago

  • Multigenome assembly

    This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Mads Albertsen, Philip Hugenholtz, Adam Skarshewski, Gen...

    Tags: Bioinformatics, Analysis, Assembly, Genome, Multigenome, Metagenome, Filter

    16 days ago