Results for "MetaGenomics"

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  • Zombies like bacteria!!!

    Do you believe in Zombies stories … Hmm confused? Don’t worry there is a news for you. Scientists from the Integrated Ocean Drilling Program have announced the findings  of the long-lived bacteria, reproducing only once every 10,000 years, which have been found in rocks 2.5km (1...

    Tags: microbes, bacteria, ocean, sediments, viruses, rock, extremophilic microbes, sequencing, metagenomics

    3860 days ago

  • SocBiN Bioinformatics 2014

    14th annual conference in Bioinformatics Date : June 10-13 Organizers: The Society for Bioinformatics in Northern European countries (SocBiN) and the Norwegian Bioinformatics Platform / ELIXIR.NO Venue: Department of Informatics, University of Oslo, Norway Topics: Tools and technolo...

    Tags: bioinformatics, genomics, metagenomics, phylogeny, gene expression, cancer, marine genomics, ENCODE, conference

    3860 days ago

  • Metagenomics

    Metagenomics

    Metagenomics is the study of genetic material from environmental samples to characterize and identify the millions of microbes from these samples. Example: Gut microbiome, soil sample, water, etc. More information: http://www.nature.com/nrmicro/focus/metagenomics/index.html http://www.ploscom...

    Tags: metagenomics, metatranscriptomics, genomics, reads, 16S rRNA, microbes, microbiology, ecogenomics, ecology, microbiome

    3667 days ago

  • Metagenomics role in antibiotic resistance

    Related latest article: http://www.nature.com/nature/journal/v509/n7502/pdf/nature13377.pdf

    Tags: metagenomics, antibiotics resistant, sequencing

    3588 days ago

  • http://vm-lux.embl.de/~kultima/MOCAT2/index.html #metagenomics

    Tags: metagenomics

    3370 days ago

  • PIT Bioinformatics Group

    PIT Bioinformatics Group solves problems in bioinformatics and computational biology. Recent developed online tools: - Budapest Reference Connectome: View a parametrizable connectome (brain graph). - AmphoraNet: The webserver implementation of the AMPHORA2 workflow for phylogenetic analysis ...

    Tags: bioinformatics, connectome, metagenomics

    3209 days ago

  • Fancy Oneliner for Bioinformatics !!

    This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste the commands as they are in your terminal screen, provided you follow the same naming conventions and folder struct...

    Tags: Bioinformatics, Analysis, Visualization, SAM, BAM, Oneliner, NGS, metagenomics

    2822 days ago

  • MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

    MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly. MEGAHIT can optionally utilize a CUDA-enabled GPU to accelerate its SdBG contstruction. The GPU-accele...

    Tags: MEGAHIT, ultra-fast, single-node, solution, large, complex, metagenomics, assembly, succinct, de Bruijn, graph

    1962 days ago

  • Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets

    Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several classical ecological distances between them. Developper: Gaëtan Benoit, PhD, former member of the Genscale team at Inria. Contact: claire dot lemaitre at i...

    Tags: Simka, SimkaMin, comparative, metagenomics, method, dedicated, NGS, datasets

    1728 days ago

  • sunbeam: A robust, extensible metagenomics pipeline

    Sunbeam is a pipeline written in snakemake that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses conda to manage dependencies, so it doesn't have pre-existing dependencies or admin privileges, and can be deployed on most Linux workstations...

    Tags: sunbeam, robust, extensible, metagenomics, pipeline

    1380 days ago